Showing 4 of total 4 results (show query)
bioc
altcdfenvs:alternative CDF environments (aka probeset mappings)
Convenience data structures and functions to handle cdfenvs
Maintained by Laurent Gautier. Last updated 5 months ago.
microarrayonechannelqualitycontrolpreprocessingannotationproprietaryplatformstranscription
4.95 score 5 scripts 1 dependentsbioc
BiGGR:Constraint based modeling in R using metabolic reconstruction databases
This package provides an interface to simulate metabolic reconstruction from the BiGG database(http://bigg.ucsd.edu/) and other metabolic reconstruction databases. The package facilitates flux balance analysis (FBA) and the sampling of feasible flux distributions. Metabolic networks and estimated fluxes can be visualized with hypergraphs.
Maintained by Anand K. Gavai. Last updated 5 months ago.
systems biologypathwaynetworkgraphandnetworkvisualizationmetabolomics
4.67 score 58 scriptsbioc
Harshlight:A "corrective make-up" program for microarray chips
The package is used to detect extended, diffuse and compact blemishes on microarray chips. Harshlight automatically marks the areas in a collection of chips (affybatch objects) and a corrected AffyBatch object is returned, in which the defected areas are substituted with NAs or the median of the values of the same probe in the other chips in the collection. The new version handle the substitute value as whole matrix to solve the memory problem.
Maintained by Maurizio Pellegrino. Last updated 5 months ago.
microarrayqualitycontrolpreprocessingonechannelreportwriting
4.20 score 2 scriptsbioc
hyperdraw:Visualizing Hypergaphs
Functions for visualizing hypergraphs.
Maintained by Paul Murrell. Last updated 5 months ago.
3.78 score 3 scripts 1 dependents