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bioc
ProteoDisco:Generation of customized protein variant databases from genomic variants, splice-junctions and manual sequences
ProteoDisco is an R package to facilitate proteogenomics studies. It houses functions to create customized (variant) protein databases based on user-submitted genomic variants, splice-junctions, fusion genes and manual transcript sequences. The flexible workflow can be adopted to suit a myriad of research and experimental settings.
Maintained by Job van Riet. Last updated 5 months ago.
softwareproteomicsrnaseqsnpsequencingvariantannotationdataimport
5 stars 5.30 score 4 scriptsbioc
synapter:Label-free data analysis pipeline for optimal identification and quantitation
The synapter package provides functionality to reanalyse label-free proteomics data acquired on a Synapt G2 mass spectrometer. One or several runs, possibly processed with additional ion mobility separation to increase identification accuracy can be combined to other quantitation files to maximise identification and quantitation accuracy.
Maintained by Laurent Gatto. Last updated 21 days ago.
immunooncologymassspectrometryproteomicsqualitycontrol
4 stars 4.73 score 5 scripts