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fmmattioni
downloadthis:Implement Download Buttons in 'rmarkdown'
Implement download buttons in HTML output from 'rmarkdown' without the need for 'runtime:shiny'.
Maintained by Felipe Mattioni Maturana. Last updated 6 months ago.
146 stars 9.63 score 856 scripts 1 dependents
bioc
EpiCompare:Comparison, Benchmarking & QC of Epigenomic Datasets
EpiCompare is used to compare and analyse epigenetic datasets for quality control and benchmarking purposes. The package outputs an HTML report consisting of three sections: (1. General metrics) Metrics on peaks (percentage of blacklisted and non-standard peaks, and peak widths) and fragments (duplication rate) of samples, (2. Peak overlap) Percentage and statistical significance of overlapping and non-overlapping peaks. Also includes upset plot and (3. Functional annotation) functional annotation (ChromHMM, ChIPseeker and enrichment analysis) of peaks. Also includes peak enrichment around TSS.
Maintained by Hiranyamaya Dash. Last updated 2 months ago.
epigeneticsgeneticsqualitycontrolchipseqmultiplecomparisonfunctionalgenomicsatacseqdnaseseqbenchmarkbenchmarkingbioconductorbioconductor-packagecomparisonhtmlinteractive-reporting
15 stars 7.49 score 46 scripts
jrosell
ambhtmx:ambhtmx
Build a Full-stack R App with ambiorix and htmx.
Maintained by Jordi Rosell. Last updated 7 months ago.
26 stars 3.74 score 14 scripts