R-universe search: needs:argparse

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bioc

infercnv:Infer Copy Number Variation from Single-Cell RNA-Seq Data

Using single-cell RNA-Seq expression to visualize CNV in cells.

Maintained by Christophe Georgescu. Last updated 5 months ago.

software copynumbervariation variantdetection structuralvariation genomicvariation genetics transcriptomics statisticalmethod bayesian hiddenmarkovmodel singlecell jags cpp

601 stars 10.92 score 674 scripts

bioc

MAGAR:MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data

"Methylation-Aware Genotype Association in R" (MAGAR) computes methQTL from DNA methylation and genotyping data from matched samples. MAGAR uses a linear modeling stragety to call CpGs/SNPs that are methQTLs. MAGAR accounts for the local correlation structure of CpGs.

Maintained by Michael Scherer. Last updated 5 months ago.

regression epigenetics dnamethylation snp geneticvariability methylationarray microarray cpgisland methylseq sequencing mrnamicroarray preprocessing copynumbervariation twochannel immunooncology differentialmethylation batcheffect qualitycontrol dataimport network clustering graphandnetwork

4.30 score 3 scripts