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bioc
RNAmodR.AlkAnilineSeq:Detection of m7G, m3C and D modification by AlkAnilineSeq
RNAmodR.AlkAnilineSeq implements the detection of m7G, m3C and D modifications on RNA from experimental data generated with the AlkAnilineSeq protocol. The package builds on the core functionality of the RNAmodR package to detect specific patterns of the modifications in high throughput sequencing data.
Maintained by Felix G.M. Ernst. Last updated 5 months ago.
softwareworkflowstepvisualizationsequencingalkanilineseqbioconductormodificationsrnarnamodr
2 stars 4.30 score 3 scriptsbioc
RNAmodR.RiboMethSeq:Detection of 2'-O methylations by RiboMethSeq
RNAmodR.RiboMethSeq implements the detection of 2'-O methylations on RNA from experimental data generated with the RiboMethSeq protocol. The package builds on the core functionality of the RNAmodR package to detect specific patterns of the modifications in high throughput sequencing data.
Maintained by Felix G.M. Ernst. Last updated 5 months ago.
softwareworkflowstepvisualizationsequencingbioconductormodificationsribomethseqrnarnamodr
1 stars 4.00 score 4 scriptsbioc
RNAmodR.ML:Detecting patterns of post-transcriptional modifications using machine learning
RNAmodR.ML extend the functionality of the RNAmodR package and classical detection strategies towards detection through machine learning models. RNAmodR.ML provides classes, functions and an example workflow to establish a detection stratedy, which can be packaged.
Maintained by Felix G.M. Ernst. Last updated 5 months ago.
softwareinfrastructureworkflowstepvisualizationsequencing
1 stars 4.00 score 3 scripts